Index

_

__getitem__() (mineralML.core.LabelDataset method)

__len__() (mineralML.core.LabelDataset method)

A

add_to_axes() (mineralML.stoichiometry.TASClassifier method) AmphiboleCalculator (class in mineralML.stoichiometry)

AmphiboleClassifier (class in mineralML.stoichiometry) ApatiteCalculator (class in mineralML.stoichiometry)

B

balance() (in module mineralML.hybrid) BaseMineralCalculator (class in mineralML.stoichiometry) batch_extract_line_profiles() (in module mineralML.mapping)

bias_mu (mineralML.hybrid.VariationalLayer attribute) bias_rho (mineralML.hybrid.VariationalLayer attribute) BiotiteCalculator (class in mineralML.stoichiometry) build_model_from_config() (in module mineralML.hybrid)

C

CalciteCalculator (class in mineralML.stoichiometry) calculate_all() (mineralML.stoichiometry.BaseMineralCalculator method) calculate_cations() (mineralML.stoichiometry.BaseMineralCalculator method) calculate_components() (mineralML.stoichiometry.AmphiboleCalculator method) (mineralML.stoichiometry.ApatiteCalculator method) (mineralML.stoichiometry.BiotiteCalculator method) (mineralML.stoichiometry.CalciteCalculator method) (mineralML.stoichiometry.ChloriteCalculator method) (mineralML.stoichiometry.ClinopyroxeneCalculator method) (mineralML.stoichiometry.EpidoteCalculator method) (mineralML.stoichiometry.FeldsparCalculator method) (mineralML.stoichiometry.GarnetCalculator method) (mineralML.stoichiometry.GlassCalculator method) (mineralML.stoichiometry.GlassClassifier method) (mineralML.stoichiometry.KalsiliteCalculator method) (mineralML.stoichiometry.LeuciteCalculator method) (mineralML.stoichiometry.MeliliteCalculator method) (mineralML.stoichiometry.MuscoviteCalculator method) (mineralML.stoichiometry.NephelineCalculator method) (mineralML.stoichiometry.OlivineCalculator method) (mineralML.stoichiometry.OrthopyroxeneCalculator method) (mineralML.stoichiometry.OxideClassifier method) (mineralML.stoichiometry.PyroxeneClassifier method) (mineralML.stoichiometry.QuartzCalculator method) (mineralML.stoichiometry.RhombohedralOxideCalculator method) (mineralML.stoichiometry.RutileCalculator method) (mineralML.stoichiometry.SerpentineCalculator method) (mineralML.stoichiometry.SodicPyroxeneCalculator method) (mineralML.stoichiometry.SpinelCalculator method) (mineralML.stoichiometry.TitaniteCalculator method) (mineralML.stoichiometry.TourmalineCalculator method) (mineralML.stoichiometry.ZirconCalculator method)

calculate_moles() (mineralML.stoichiometry.BaseMineralCalculator method) calculate_oxygens() (mineralML.stoichiometry.BaseMineralCalculator method) calculate_ridolfi_sites() (mineralML.stoichiometry.AmphiboleCalculator method) ChloriteCalculator (class in mineralML.stoichiometry) class2mineral() (in module mineralML.hybrid) classify() (mineralML.stoichiometry.AmphiboleClassifier method) (mineralML.stoichiometry.PyroxeneClassifier method) ClinopyroxeneCalculator (class in mineralML.stoichiometry) compute_z2_from_df() (in module mineralML.hybrid) config_cell_text_and_colors() (in module mineralML.confusion_matrix) confusion_matrix_df() (in module mineralML.confusion_matrix) convert_fe_to_feot() (in module mineralML.hybrid)

D

df_to_maps() (in module mineralML.mapping)

E

element_to_oxide() (in module mineralML.stoichiometry) element_to_oxide_identity() (in module mineralML.stoichiometry) enable_mc_sampling() (in module mineralML.hybrid)

EpidoteCalculator (class in mineralML.stoichiometry) export_predictions_to_excel() (in module mineralML.core) extract_line_profile() (in module mineralML.mapping)

F

FeatureExtractor (class in mineralML.hybrid) FeldsparCalculator (class in mineralML.stoichiometry) FeldsparClassifier (class in mineralML.stoichiometry)

fill_phase_holes() (in module mineralML.mapping) format_oxide_label() (in module mineralML.hybrid) forward() (mineralML.hybrid.VariationalLayer method)

G

GarnetCalculator (class in mineralML.stoichiometry) get_profile_map() (in module mineralML.mapping)

get_rock_name() (mineralML.stoichiometry.TASClassifier method) GlassCalculator (class in mineralML.stoichiometry) GlassClassifier (class in mineralML.stoichiometry)

I

insert_totals() (in module mineralML.confusion_matrix)

interactive_line_profile() (in module mineralML.mapping) interactive_pixels() (in module mineralML.mapping)

K

KalsiliteCalculator (class in mineralML.stoichiometry)

kl_divergence() (mineralML.hybrid.VariationalLayer method) kl_divergence_sum() (in module mineralML.hybrid)

L

LabelDataset (class in mineralML.core) LatentProjector (class in mineralML.hybrid) LeuciteCalculator (class in mineralML.stoichiometry) load_df() (in module mineralML.core) load_element_maps() (in module mineralML.mapping)

load_hybrid_checkpoint() (in module mineralML.hybrid) load_maps_from_dir() (in module mineralML.mapping) load_minclass_nn() (in module mineralML.hybrid) load_mineral_classes() (in module mineralML.hybrid) load_model() (in module mineralML.core) load_scaler() (in module mineralML.core)

M

maps_to_df() (in module mineralML.mapping) MeliliteCalculator (class in mineralML.stoichiometry) mineralML.confusion_matrix module mineralML.constants module mineralML.core module mineralML.hybrid module mineralML.mapping module

mineralML.stoichiometry module mineralML.synthetic_minerals module module mineralML.confusion_matrix mineralML.constants mineralML.core mineralML.hybrid mineralML.mapping mineralML.stoichiometry mineralML.synthetic_minerals MuscoviteCalculator (class in mineralML.stoichiometry)

N

NephelineCalculator (class in mineralML.stoichiometry)

norm_data() (in module mineralML.hybrid)

O

OlivineCalculator (class in mineralML.stoichiometry) OrthopyroxeneCalculator (class in mineralML.stoichiometry)

oxide_to_element() (in module mineralML.stoichiometry) OxideClassifier (class in mineralML.stoichiometry)

P

parse_ctf_header() (in module mineralML.mapping) pick_common_phases() (in module mineralML.mapping) plot() (mineralML.stoichiometry.GlassClassifier method) (mineralML.stoichiometry.OxideClassifier method) (mineralML.stoichiometry.PyroxeneClassifier method) plot_component_composite() (in module mineralML.mapping) plot_ctf_phases() (in module mineralML.mapping) plot_harker() (in module mineralML.hybrid) plot_latent_space() (in module mineralML.hybrid) plot_latent_space_training() (in module mineralML.hybrid) plot_line_profile() (in module mineralML.mapping) plot_locations() (in module mineralML.mapping) plot_loss_curves() (in module mineralML.hybrid)

plot_oxide_map() (in module mineralML.mapping) plot_phase_counts() (in module mineralML.mapping) plot_phase_map() (in module mineralML.mapping) plot_phase_proportions() (in module mineralML.mapping) plot_pred_score_histograms() (in module mineralML.mapping) plot_score_map() (in module mineralML.mapping) plot_z2_overlay() (in module mineralML.hybrid) pp_matrix() (in module mineralML.confusion_matrix) predict() (mineralML.stoichiometry.TASClassifier method) predict_class_prob() (in module mineralML.hybrid) predict_class_prob_nnwr() (in module mineralML.hybrid) prep_df() (in module mineralML.hybrid) PyroxeneClassifier (class in mineralML.stoichiometry)

Q

QuartzCalculator (class in mineralML.stoichiometry)

R

ReconstructionDecoder (class in mineralML.hybrid) ReconstructionWrapper (class in mineralML.hybrid) remove_islands() (in module mineralML.mapping) renormalize_maps() (in module mineralML.mapping)

reset_parameters() (mineralML.hybrid.VariationalLayer method) RhombohedralOxideCalculator (class in mineralML.stoichiometry) run_map() (in module mineralML.mapping) RutileCalculator (class in mineralML.stoichiometry)

S

same_seeds() (in module mineralML.core) save_model_nn() (in module mineralML.core) SerpentineCalculator (class in mineralML.stoichiometry)

SodicPyroxeneCalculator (class in mineralML.stoichiometry) softplus (mineralML.hybrid.VariationalLayer attribute) SpinelCalculator (class in mineralML.stoichiometry)

T

TASClassifier (class in mineralML.stoichiometry) TitaniteCalculator (class in mineralML.stoichiometry) TourmalineCalculator (class in mineralML.stoichiometry)

train_hybrid_model() (in module mineralML.hybrid) train_nn_hybrid_bottleneck() (in module mineralML.hybrid) train_nn_hybrid_classifier() (in module mineralML.hybrid)

U

unique_mapping() (in module mineralML.hybrid)

V

VariationalLayer (class in mineralML.hybrid)

W

weight_mu (mineralML.hybrid.VariationalLayer attribute)

weight_rho (mineralML.hybrid.VariationalLayer attribute) weights_init() (in module mineralML.core)

Z

ZirconCalculator (class in mineralML.stoichiometry)